Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 843-augustus_masked-BBM_6-7255 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 844-augustus_masked-BBM_6-7255 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 845-augustus_masked-BBM_6-7255 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 846-augustus_masked-BBM_6-7255 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 847-augustus_masked-YCI-6005 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 848-augustus_masked-CCQ_1-5470 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 849-augustus_masked-CCQ_1-5470 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 850-augustus_masked-YDE-5670 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 851-augustus_masked-CGD_5-5430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 852-augustus_masked-CGD_5-5430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 853-augustus_masked-CGD_5-5430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 854-augustus_masked-CGD_5-5430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 855-augustus_masked-CGD_5-5430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 856-augustus_masked-CPA_4-16966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 857-augustus_masked-BBG_6-26461 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |