Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 812-augustus_masked-ABM_5-4619 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 813-augustus_masked-ABM_5-4619 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 814-augustus_masked-ABM_5-4619 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 815-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 816-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 817-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 818-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 819-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 820-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 821-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 822-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 823-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 824-augustus_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 825-augustus_masked-YCL-7822 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 826-augustus_masked-YCL-7822 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |