Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 782-augustus_masked-BBM_6-7237 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 783-augustus_masked-BBM_6-7237 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 784-augustus_masked-CPM_4-14712 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 785-augustus_masked-CDT_2-5309 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 786-augustus_masked-AQA_4-7230 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 787-augustus_masked-YCM-7981 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 788-augustus_masked-YCM-7981 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 789-augustus_masked-CPM_4-14662 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 790-augustus_masked-AMH_5-6637 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 791-augustus_masked-AMH_5-6637 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 792-augustus_masked-AVB_8-8054 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 793-augustus_masked-CPI_4-15676 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 794-augustus_masked-CPA_4-16604 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 795-augustus_masked-YAE-4456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 796-augustus_masked-YAE-4456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |