Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 68-augustus_masked-11590-BAL_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 69-augustus_masked-11590-BAL_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 70-augustus_masked-11626-ASB_2 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 71-augustus_masked-11626-ASB_2 | NA | NA | NA | NA | Accessory | candidate HGT | Zygosaccharomyces sp. | Zygosaccharomyces bailii /parabailii |
| 72-augustus_masked-1166-YCM | NA | NA | NA | NA | Accessory | candidate HGT | Kluvyeromyces | Torulaspora delbrueckii NRRL Y-50541 chr 4 |
| 73-augustus_masked-1166-YCM | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 74-augustus_masked-11951-BDM_5 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 75-augustus_masked-11951-BDM_5 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 76-augustus_masked-11960-BDM_5 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 77-augustus_masked-11963-BDM_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 78-augustus_masked-1197-YCM | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 79-augustus_masked-11976-ANL_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 80-augustus_masked-12142-CPK_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 81-augustus_masked-1220-ANM_2 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 82-augustus_masked-12212-ALI_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |