Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 721-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 722-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 723-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 724-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 725-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 726-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 727-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 728-augustus_masked-CPK_4-16846 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 729-augustus_masked-ACD_7-5647 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 730-augustus_masked-CPN_4-15569 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 731-augustus_masked-CPI_4-15898 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 732-augustus_masked-CPI_4-15898 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 733-augustus_masked-CPK_4-16846 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 734-augustus_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 735-augustus_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |