ScRAPdb    Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)



A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).



PanORF ID                                               SGD systematic Name SGD standard name Alias Description                                               Type Origin assignment Mostly likely origin species NCBI megablast hit
676-snap_masked-7558-ACQ_8 NA NA NA NA Accessory Ancestral NA NA
677-snap_masked-7593-CPQ_4 NA NA NA NA Accessory Ancestral NA NA
678-snap_masked-7599-CPQ_4 NA NA NA NA Accessory Introgression S. paradoxus NA
679-snap_masked-7614-CPQ_4 NA NA NA NA Accessory Introgression S. paradoxus NA
680-snap_masked-7627-AVS_5 NA NA NA NA Accessory Ancestral NA NA
681-snap_masked-779-BSG_4 NA NA NA NA Accessory Ancestral NA NA
682-snap_masked-779-BSG_4 NA NA NA NA Accessory candidate HGT Methylobacterium platani Agrobacterium tumefaciens S33
683-snap_masked-829-YDL NA NA NA NA Accessory Ancestral NA NA
684-snap_masked-859-BGT_2 NA NA NA NA Accessory Unknown NA NA
685-snap_masked-8851-CQS_4 NA NA NA NA Accessory Ancestral NA NA
686-snap_masked-8883-BQB_4 NA NA NA NA Accessory Ancestral NA NA
687-snap_masked-9062-CEI_2 NA NA NA NA Accessory Introgression UNKNOWN SOURCE NA
688-snap_masked-9264-AVR_6 NA NA NA NA Accessory candidate HGT NA Vanderwaltozyma polyspora
689-snap_masked-9462-CCR_1 NA NA NA NA Accessory Ancestral NA NA
690-snap_masked-963-AFD_4 NA NA NA NA Accessory Introgression S. paradoxus NA

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