A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
---|---|---|---|---|---|---|---|---|
676-snap_masked-7558-ACQ_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
677-snap_masked-7593-CPQ_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
678-snap_masked-7599-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
679-snap_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
680-snap_masked-7627-AVS_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
681-snap_masked-779-BSG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
682-snap_masked-779-BSG_4 | NA | NA | NA | NA | Accessory | candidate HGT | Methylobacterium platani | Agrobacterium tumefaciens S33 |
683-snap_masked-829-YDL | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
684-snap_masked-859-BGT_2 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
685-snap_masked-8851-CQS_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
686-snap_masked-8883-BQB_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
687-snap_masked-9062-CEI_2 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
688-snap_masked-9264-AVR_6 | NA | NA | NA | NA | Accessory | candidate HGT | NA | Vanderwaltozyma polyspora |
689-snap_masked-9462-CCR_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
690-snap_masked-963-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |