Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 660-snap_masked-6350-BAN_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 661-snap_masked-6415-CDN_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 662-snap_masked-643-BBP_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 663-snap_masked-6649-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 664-snap_masked-6650-CPA_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 665-snap_masked-6650-CPA_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 666-snap_masked-6650-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 667-snap_masked-6650-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 668-snap_masked-6875-YCR | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 669-snap_masked-6882-YCR | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 670-snap_masked-6915-AFK_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 671-snap_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 672-snap_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 674-snap_masked-7473-CCL_1 | NA | NA | NA | NA | Accessory | Unknown | S. mikatae | NA |
| 675-snap_masked-749-BKQ_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |