Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 645-snap_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | NA | Torulaspora delbrueckii CBS 1146 chr7 |
| 646-snap_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | NA | Lachancea termotolerans / Kluyveromyces lactis |
| 647-snap_masked-5060-CCS_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 648-snap_masked-5063-CCS_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 649-snap_masked-5079-CKG_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 650-snap_masked-516-ADN_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 651-snap_masked-5418-YCY | NA | NA | NA | NA | Accessory | candidate HGT | Babjeviella sp. | Candida glabrata mitochondrion / Lachancea kluyveri mitochondria |
| 652-snap_masked-5425-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 653-snap_masked-548-ADN_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 654-snap_masked-5487-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 655-snap_masked-5495-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 656-snap_masked-5627-CKN_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 657-snap_masked-5766-AVQ_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 658-snap_masked-6122-CDL_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 659-snap_masked-630-CHM_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |