Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 615-snap_masked-3161-AGR_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 616-snap_masked-3224-CEH_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 617-snap_masked-3299-BHG_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 618-snap_masked-3423-YAX | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 619-snap_masked-348-ALB_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 620-snap_masked-349-ALB_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 621-snap_masked-3624-CNG_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 622-snap_masked-3685-BTA_5 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 623-snap_masked-3817-CBB_4 | NA | NA | NA | NA | Accessory | candidate HGT | Torulaspora sp. | NA |
| 624-snap_masked-3893-ATH_3 | NA | NA | NA | NA | Accessory | candidate HGT | Naumovzyma | Kazachstania africana CBS 2517 |
| 625-snap_masked-3893-ATH_3 | NA | NA | NA | NA | Accessory | candidate HGT | NA | Candida tenuis ATCC 10573 |
| 626-snap_masked-3911-CCQ_1 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 627-snap_masked-4168-BEK_7 | NA | NA | NA | NA | Accessory | HGT | M28 virus | M28 Killer toxin mRNA from S.paradoxus |
| 628-snap_masked-4220-BCN_8 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 629-snap_masked-4255-BCN_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |