Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 46-PUT_LAC_TRASP-R.14850- | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 47-RTM1-R.14851- | YSC0032 | RTM1 | NA | Member of the lipid-translocating exporter (LTE) family; present in multiple copies associated with SUC telomeric loci, amplified in yeasts used for industrial biomass or ethanol production with molasses as substrate | Accessory | Unknown | NA | NA |
| 48-MPR1-R.14847- | YSC0029 | MPR1 | NA | L-azetidine-2-carboxylic acid acetyltransferase; reduces intracellular ROS and contributes to L-proline analog resistance and tolerance to ethanol and freezing; member of N-acetyltransferase superfamily; not found in S288C, only present in strains with Sigma1278b background; located on left arm of chromosome XIV approximately 15 kb from telomere | Accessory | Ancestral | NA | NA |
| 49-MEL1-R.14846- | YSC0019 | MEL1 | NA | Secreted alpha-galactosidase; required for catabolic conversion of melibiose to glucose and galactose; regulated by several GAL genes; mapped to -77.0 cM on chrII | Accessory | Ancestral | NA | NA |
| 50-BIO6-R.8578- | YSC0043 | BIO6 | YAR069W-A | Putative 7-keto-8-aminopelargonic acid (KAPA) synthetase; in sake strains and S. cerevisiae strains YJM627 and A364a; involved in the biotin biosynthesis pathway; homologs present in S. bayanus, S. paradoxus, S. mikatae and S. kudriavzevii | Accessory | Ancestral | NA | NA |
| 58-augustus_masked-11091-BAF_6 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 59-augustus_masked-1113-BMC_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 60-augustus_masked-11172-CPM_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 61-augustus_masked-11216-CPN_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 62-augustus_masked-11537-CPG_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 63-augustus_masked-11538-CPG_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 64-augustus_masked-11538-CPG_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 65-augustus_masked-11538-CPG_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 66-augustus_masked-11538-CPG_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 67-augustus_masked-11588-BAL_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |