Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 600-snap_masked-280-BFM_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 601-snap_masked-2806-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 602-snap_masked-2816-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 603-snap_masked-2823-CPI_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 604-snap_masked-2838-CPI_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 605-snap_masked-2844-CPI_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 606-snap_masked-2851-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 607-snap_masked-2959-AEE_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 608-snap_masked-2960-AEE_3 | NA | NA | NA | NA | Accessory | candidate HGT | NA | Zygosaccharomyces rouxii CBS732 chr E |
| 609-snap_masked-297-ALB_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 610-snap_masked-2999-BGP_1 | NA | NA | NA | NA | Core | NA | NA | NA |
| 611-snap_masked-3001-BGP_1 | NA | NA | NA | NA | Core | NA | NA | NA |
| 612-snap_masked-3053-YCS | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 613-snap_masked-3084-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 614-snap_masked-3088-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |