Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 585-snap_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 586-snap_masked-1768-ATP_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 587-snap_masked-1768-ATP_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 588-snap_masked-1963-YCU | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 589-snap_masked-1989-AID_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 590-snap_masked-207-BFM_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 591-snap_masked-217-BFM_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 592-snap_masked-2208-ABD_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 593-snap_masked-2218-BDE_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 594-snap_masked-2218-BDE_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 595-snap_masked-2218-BDE_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 596-snap_masked-2357-ARB_2 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 597-snap_masked-2392-BTV_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 598-snap_masked-277-BFM_3 | NA | NA | NA | NA | Accessory | candidate HGT | Stenotrophomonas maltophilia | NA |
| 599-snap_masked-2798-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |