Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 527-maker-8487-AQD_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 528-maker-861-BGT_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr8 |
| 529-maker-8850-CQS_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 530-maker-8850-CQS_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 531-maker-904-BDN_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 532-maker-934-BDN_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 533-maker-947-AFD_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 534-maker-963-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 535-maker-969-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 536-maker-970-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 537-maker-9712-ASM_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 538-maker-988-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 539-maker-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 540-maker-9894-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 541-maker-9901-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |