Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 512-maker-5547-BBE_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 513-maker-5943-ACI_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 514-maker-5995-BBR_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 515-maker-6239-GAT | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 516-maker-6413-CDN_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 517-maker-6533-ADE_2 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 518-maker-6650-CPA_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 519-maker-6662-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 520-maker-6686-CAD_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 521-maker-677-YCN | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 522-maker-7605-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 523-maker-7978-AMM_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 524-maker-813-CAS_1_AC1LP.IND6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 525-maker-8310-CCT_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 526-maker-837-YDL | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |