Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 497-maker-3860-CMG_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 498-maker-3872-BTB_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 499-maker-3927-CCQ_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 500-maker-4265-BCN_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 501-maker-4362-AMP_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 502-maker-44-ARV_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 503-maker-4866-BCP_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 504-maker-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 505-maker-5061-CCS_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 506-maker-5092-CGI_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 507-maker-520-ADN_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 508-maker-5276-BPV_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 509-maker-5314-AAQ_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 510-maker-5430-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 511-maker-5486-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |