Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 482-maker-2990-BGP_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 483-maker-2999-BGP_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 484-maker-3105-AHL_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 485-maker-3212-CEH_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 486-maker-3217-CEH_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 487-maker-3418-ADG_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 488-maker-3439-YAX | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 489-maker-348-ALB_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 490-maker-348-ALB_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 491-maker-348-ALB_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 492-maker-348-ALB_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 493-maker-368-YDJ | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 494-maker-370-YDJ | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 495-maker-3715-BPA_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 496-maker-378-YDJ | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |