Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 467-maker-2381-BTV_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 468-maker-2392-BTV_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 469-maker-2392-BTV_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 470-maker-253-BFM_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 471-maker-266-BFM_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 472-maker-2796-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 473-maker-2803-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 474-maker-2815-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 475-maker-2817-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 476-maker-2831-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 477-maker-2859-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 478-maker-2861-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 479-maker-2861-CPI_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 480-maker-2872-CLM_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 481-maker-2926-CDB_2 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |