Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 452-maker-1692-AIE_1 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 453-maker-1698-AIE_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 454-maker-1706-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 455-maker-1744-ATP_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 456-maker-1897-CLC_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 457-maker-208-BFM_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 458-maker-2144-BRV_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 459-maker-2148-BRV_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 460-maker-2154-BRV_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 461-maker-2154-BRV_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 462-maker-2208-ABD_5 | NA | NA | NA | NA | Accessory | candidate HGT | NA | S.paradoxus/Candida glabrata |
| 463-maker-2208-ABD_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 464-maker-2210-ABD_5 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 465-maker-2357-ARB_2 | NA | NA | NA | NA | Accessory | HGT | Hanseniaspora sp. | NA |
| 466-maker-2357-ARB_2 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces sp. | Zygosaccharomyces rouxii CBS732 chr B |