Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 31-EC1118_1O4_6656g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 32-augustus_masked-1-AMHPLA_TAIW | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 33-augustus_masked-1-AMHPLA_TAIW | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 34-augustus_masked-1-AMHPLA_TAIW | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 35-augustus_masked-1-AMHPLA_TAIW | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 36-augustus_masked-2-CGIPLA_MA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 37-augustus_masked-2-CGIPLA_MA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 38-augustus_masked-2-CGIPLA_MA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 39-augustus_masked-2-CGIPLA_MA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 40-augustus_masked-3-ALIPLA_SA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 41-augustus_masked-3-ALIPLA_SA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 42-augustus_masked-3-ALIPLA_SA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 43-snap_masked-3-ALIPLA_SA | NA | NA | NA | NA | Accessory | Plasmid | NA | NA |
| 44-PUT_AA_TRASP-R.14848- | YSC0045 | TAT3 | NA | Permease identified in lager brewing yeast strain Weihenstephan Nr.34; also in RM11-1a, but not S288C; subject to nitrogen catabolite repression and post-translational control, cellular localization dependent on nitrogen source quality | Accessory | Ancestral | NA | NA |
| 45-PUT_IRON_TRASP-R.14849- | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |