Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 413-augustus_masked-9908-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 414-augustus_masked-9908-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 415-augustus_masked-9908-CPR_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 416-augustus_masked-9908-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 417-augustus_masked-9909-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 418-augustus_masked-9909-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 419-augustus_masked-9909-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 420-augustus_masked-9909-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 421-augustus_masked-9909-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 426-maker-115-YCE | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 431-maker-11536-CPG_1 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 432-maker-11651-CDK_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 433-maker-1190-YCM | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 434-maker-11951-BDM_5 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 435-maker-11951-BDM_5 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |