Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 398-augustus_masked-990-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 399-augustus_masked-990-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 400-augustus_masked-990-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 401-augustus_masked-9901-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 402-augustus_masked-9901-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 403-augustus_masked-9901-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 404-augustus_masked-9902-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 405-augustus_masked-9902-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 406-augustus_masked-9902-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 407-augustus_masked-9902-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 408-augustus_masked-9905-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 409-augustus_masked-9905-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 410-augustus_masked-9906-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 411-augustus_masked-9907-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 412-augustus_masked-9907-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |