Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 383-augustus_masked-969-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 384-augustus_masked-986-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 385-augustus_masked-9880-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 386-augustus_masked-9884-CPR_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 387-augustus_masked-9885-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 388-augustus_masked-9889-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 389-augustus_masked-9889-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 390-augustus_masked-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 391-augustus_masked-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 392-augustus_masked-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 393-augustus_masked-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 394-augustus_masked-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 395-augustus_masked-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 396-augustus_masked-9894-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 397-augustus_masked-9894-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |