Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 368-augustus_masked-8846-CQS_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 369-augustus_masked-8850-CQS_4 | NA | NA | NA | NA | Accessory | candidate HGT | Lacchancea sp. | Zygosaccharomyces bailii /parabailii |
| 370-augustus_masked-8850-CQS_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 371-augustus_masked-8850-CQS_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 372-augustus_masked-8851-CQS_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 373-augustus_masked-893-BGT_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 374-augustus_masked-9019-CEI_2 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 375-augustus_masked-9019-CEI_2 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 376-augustus_masked-9019-CEI_2 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 377-augustus_masked-9019-CEI_2 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 378-augustus_masked-9019-CEI_2 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 379-augustus_masked-905-BDN_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 380-augustus_masked-932-BDN_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 381-augustus_masked-9671-CGD_5 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 382-augustus_masked-969-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |