Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 353-augustus_masked-7951-AMM_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 354-augustus_masked-7951-AMM_4 | NA | NA | NA | NA | Accessory | candidate HGT | Candida | Kazachstania africana CBS 2517 chr 3 |
| 355-augustus_masked-7976-AMM_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 356-augustus_masked-815-CAS_1_AC1LP.IND6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 357-augustus_masked-824-YDL | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 358-augustus_masked-8488-AQD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 359-augustus_masked-8489-AQD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 360-augustus_masked-858-BGT_2 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 361-augustus_masked-863-BGT_2 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 362-augustus_masked-868-BGT_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 363-augustus_masked-877-BGT_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 364-augustus_masked-877-BGT_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 365-augustus_masked-8812-CQS_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 366-augustus_masked-8812-CQS_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 367-augustus_masked-8846-CQS_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |