Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 338-augustus_masked-7617-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 339-augustus_masked-7617-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 340-augustus_masked-7617-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 341-augustus_masked-7617-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 342-augustus_masked-770-BSG_4 | NA | NA | NA | NA | Accessory | candidate HGT | NA | Torulaspora delbrueckii CBS 1146 chr 5 |
| 343-augustus_masked-772-BSG_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 344-augustus_masked-774-BSG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 345-augustus_masked-774-BSG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 346-augustus_masked-779-BSG_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 347-augustus_masked-779-BSG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 348-augustus_masked-779-BSG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 349-augustus_masked-779-BSG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 350-augustus_masked-779-BSG_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 351-augustus_masked-7810-APQ_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 352-augustus_masked-7951-AMM_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |