Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 323-augustus_masked-7610-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 324-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 325-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 326-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 327-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 328-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 329-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 330-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 331-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 332-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 333-augustus_masked-7614-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 334-augustus_masked-7615-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 335-augustus_masked-7617-CPQ_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 336-augustus_masked-7617-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 337-augustus_masked-7617-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |