Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 308-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 309-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 310-augustus_masked-705-YCN | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 311-augustus_masked-712-YCN | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 312-augustus_masked-740-YCN | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 313-augustus_masked-752-BKQ_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 314-augustus_masked-758-BKQ_2 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 315-augustus_masked-7597-CPQ_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 316-augustus_masked-7604-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 317-augustus_masked-7604-CPQ_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 318-augustus_masked-7605-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 319-augustus_masked-7606-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 320-augustus_masked-7607-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 321-augustus_masked-7608-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 322-augustus_masked-7610-CPQ_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |