Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 293-augustus_masked-6738-ATQ_7 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 294-augustus_masked-6739-ATQ_7 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 295-augustus_masked-68-ARV_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 296-augustus_masked-6810-YDO | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 297-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 298-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 299-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 300-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 301-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 302-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 303-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 304-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 305-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 306-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 307-augustus_masked-7012-CFC_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |