Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 16-EC1118_1N26_0045g | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 17-EC1118_1N26_0056g | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 18-EC1118_1O4_6480g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 19-EC1118_1O4_6491g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 20-EC1118_1O4_6502g_NumOfGenes_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 21-EC1118_1O4_6524g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 22-EC1118_1O4_6535g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 23-EC1118_1O4_6546g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 24-EC1118_1O4_6557g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 25-EC1118_1O4_6568g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 26-EC1118_1O4_6579g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 27-EC1118_1O4_6612g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 28-EC1118_1O4_6623g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 29-EC1118_1O4_6634g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 30-EC1118_1O4_6645g | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |