Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 278-augustus_masked-614-ASC_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 279-augustus_masked-6368-YDG | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 280-augustus_masked-6407-CDN_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 281-augustus_masked-6423-BAK_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 282-augustus_masked-647-BBP_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 283-augustus_masked-6503-ADE_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 284-augustus_masked-6510-ADE_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 285-augustus_masked-6649-CPA_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 286-augustus_masked-6649-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 287-augustus_masked-6649-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 288-augustus_masked-6650-CPA_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 289-augustus_masked-6667-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 290-augustus_masked-6668-CPA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 291-augustus_masked-6738-ATQ_7 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 292-augustus_masked-6738-ATQ_7 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |