Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 263-augustus_masked-5432-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 264-augustus_masked-5482-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 265-augustus_masked-5486-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 266-augustus_masked-5486-AQA_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 267-augustus_masked-5487-AQA_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 268-augustus_masked-5488-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 269-augustus_masked-5488-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 270-augustus_masked-5489-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 271-augustus_masked-5495-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 272-augustus_masked-5495-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 273-augustus_masked-5495-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 274-augustus_masked-5497-AQA_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 275-augustus_masked-55-ARV_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 276-augustus_masked-5742-AVQ_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 277-augustus_masked-579-ASC_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |