Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 248-augustus_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | Kluyveromyces lactis strain GG799 chrC/Zygosaccharomyce rouxii CBS732 chrG/Torulaspora delbrueckii CBS1146 chr4/Z. Parabailii chr2 |
| 249-augustus_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | Torulaspora microellipsoides/Torulaspora delbruekii CBS1146 chr8/Zygosaccharomyces rouxii chrA |
| 250-augustus_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 251-augustus_masked-515-ADN_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 252-augustus_masked-516-ADN_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 253-augustus_masked-5248-CIL_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 254-augustus_masked-5425-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 255-augustus_masked-5427-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 256-augustus_masked-5427-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 257-augustus_masked-5427-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 258-augustus_masked-5430-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 259-augustus_masked-5430-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 260-augustus_masked-5430-CDT_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 261-augustus_masked-5430-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 262-augustus_masked-5430-CDT_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |