Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 2438-YCR095C | YCR095C | OCA4 | NA | Cytoplasmic protein required for replication of Brome mosaic virus; S. cerevisiae is a model system for studying replication of positive-strand RNA viruses in their natural hosts | Core | NA | NA | NA |
| 2439-YCR095W-A | YCR095W-A | NA | NA | Putative protein of unknown function | Core | NA | NA | NA |
| 2440-YCR097W | YCR097W | HMRA1 | YCR097WB | Silenced copy of a1 at HMR; homeobox corepressor that interacts with Alpha2p to repress haploid-specific gene transcription in diploid cells | Accessory | Unknown | S. paradoxus | NA |
| 2441-YCR097W-A | YCR097W-A | NA | NA | Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by homology to a hemiascomycetous yeast protein | Accessory | Ancestral | NA | NA |
| 2442-YCR098C_NumOfGenes_2 | YCR098C | GIT1 | NA | Plasma membrane permease; mediates uptake of glycerophosphoinositol and glycerophosphocholine as sources of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability | Accessory | Ancestral | NA | NA |
| 2443-YCR099C | YCR099C | NA | NA | Putative protein of unknown function | Accessory | Ancestral | NA | NA |
| 2444-YCR100C | YCR100C | NA | NA | Putative protein of unknown function | Accessory | Ancestral | NA | NA |
| 2445-YCR101C | YCR101C | NA | NA | Putative protein of unknown function; localizes to the membrane fraction; YCR101C is not an essential gene | Accessory | Ancestral | NA | NA |
| 2446-YCR102C_NumOfGenes_2 | YCR102C | NA | NA | Putative protein of unknown function; involved in copper metabolism; similar to C. carbonum toxD gene; member of the quinone oxidoreductase family | Accessory | Ancestral | NA | NA |
| 2447-YCR102W-A | YCR102W-A | NA | NA | Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data | Accessory | Unknown | NA | NA |
| 2448-YCR105W | YCR105W | ADH7 | NADP-dependent alcohol dehydrogenase|ADHVII | NADPH-dependent medium chain alcohol dehydrogenase; has broad substrate specificity; member of the cinnamyl family of alcohol dehydrogenases; may be involved in fusel alcohol synthesis or in aldehyde tolerance | Accessory | Ancestral | NA | NA |
| 2449-YCR106W | YCR106W | RDS1 | NA | Putative zinc cluster transcription factor; involved in conferring resistance to cycloheximide | Accessory | Ancestral | NA | NA |
| 2450-YCR107W_NumOfGenes_4 | YCR107W | AAD3 | putative aryl-alcohol dehydrogenase | Putative aryl-alcohol dehydrogenase; similar to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role; AAD3 has a paralog, AAD15, that arose from a segmental duplication; members of the AAD gene family comprise three pairs (AAD3 + AAD15, AAD6/AAD16 + AAD4, AAD10 + AAD14) whose two genes are more related to one another than to other members of the family | Accessory | Ancestral | NA | NA |
| 2451-YCR108C_NumOfGenes_2 | YCR108C | NA | NA | Putative protein of unknown function; identified by fungal homology and RT-PCR | Accessory | Ancestral | NA | NA |
| 2452-YDL001W | YDL001W | RMD1 | NA | Cytoplasmic protein required for sporulation | Core | NA | NA | NA |