Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 233-augustus_masked-4747-CNV_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 234-augustus_masked-4747-CNV_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 235-augustus_masked-4747-CNV_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 236-augustus_masked-4748-CNV_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 237-augustus_masked-4776-BCQ_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 238-augustus_masked-4776-BCQ_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 239-augustus_masked-479-AFG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 240-augustus_masked-4803-CPS_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 241-augustus_masked-4866-BCP_8 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 242-augustus_masked-4866-BCP_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 243-augustus_masked-4867-BCP_8 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 244-augustus_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | NA | Zygosaccharomyces rouxii CBS732 chr G |
| 245-augustus_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | Lacchancea sp. | Zygosaccharomyces parabailii chr2 |
| 246-augustus_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | Ogatae | Torulaspora delbrueckii CBS 1146 chr4/Zygosaccharomyse rouxii CBS732 chrC/ Z. parabailli chr2 |
| 247-augustus_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | Candida | Zygosaccharomyse rouxii CBS732 chrB, Candida tenuis / Wickerhamomyces anomalus/… |