Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 218-augustus_masked-339-ALB_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 219-augustus_masked-340-ALB_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 220-augustus_masked-345-ALB_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 221-augustus_masked-3523-CFG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 222-augustus_masked-36-ARV_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 223-augustus_masked-3612-CNG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 224-augustus_masked-365-YDJ | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 225-augustus_masked-3859-CMG_6 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 226-augustus_masked-3859-CMG_6 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 227-augustus_masked-3919-CCQ_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 228-augustus_masked-4176-BEK_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 229-augustus_masked-4305-BND_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 230-augustus_masked-4431-BFP_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 231-augustus_masked-4576-BGM_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 232-augustus_masked-4658-BEB_6_C37T3ACXX.IND41b | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |