Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 203-augustus_masked-2870-CLM_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 204-augustus_masked-2970-AEE_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 205-augustus_masked-3001-BGP_1 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 206-augustus_masked-3085-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 207-augustus_masked-3085-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 208-augustus_masked-3088-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 209-augustus_masked-310-ALB_3 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 210-augustus_masked-3103-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 211-augustus_masked-3105-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 212-augustus_masked-3105-AHL_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 213-augustus_masked-314-ALB_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 214-augustus_masked-3210-CEH_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 215-augustus_masked-3286-BHG_2 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 216-augustus_masked-3344-CLG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 217-augustus_masked-339-ALB_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |