Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 188-augustus_masked-2814-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 189-augustus_masked-2814-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 190-augustus_masked-2843-CPI_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 191-augustus_masked-2848-CPI_4 | NA | NA | NA | NA | Accessory | candidate HGT | Vanderwaltozyma | Naumovozyma dairenensis (HE580272.1) |
| 192-augustus_masked-2854-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 193-augustus_masked-2860-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 194-augustus_masked-2860-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 195-augustus_masked-2861-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 196-augustus_masked-2861-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 197-augustus_masked-2861-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 198-augustus_masked-2861-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 199-augustus_masked-2861-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 200-augustus_masked-2861-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 201-augustus_masked-2861-CPI_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 202-augustus_masked-2866-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |