Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 173-augustus_masked-2546-BAD_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 174-augustus_masked-2591-YAA | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 175-augustus_masked-2782-CPI_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 176-augustus_masked-2799-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 177-augustus_masked-2802-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 178-augustus_masked-2804-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 179-augustus_masked-2806-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 180-augustus_masked-2809-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 181-augustus_masked-2810-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 182-augustus_masked-2811-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 183-augustus_masked-2811-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 184-augustus_masked-2814-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 185-augustus_masked-2814-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 186-augustus_masked-2814-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 187-augustus_masked-2814-CPI_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |