Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1748-snap_masked-CDT_2-5315 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1749-snap_masked-AQM_4-11146 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1750-snap_masked-CPN_4-15370 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1751-snap_masked-BSL_4-12345 | NA | NA | NA | NA | Accessory | candidate HGT | Zygosaccharomyces sp. | S. eubayanus mitochondrion |
| 1752-snap_masked-CEG_4-7331 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1753-snap_masked-CPN_4-15564 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1754-snap_masked-CGD_5-5418 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1755-snap_masked-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1756-snap_masked-CQS_4-6420 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1757-snap_masked-CQS_4-6420 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1758-snap_masked-BBM_6-7261 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1759-snap_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1760-snap_masked-YAB-7556 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1761-snap_masked-CGD_5-5424 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1762-snap_masked-ANM_2-42027 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |