Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1732-snap_masked-BRK_4-4801 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1733-snap_masked-CPK_4-16409 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1734-snap_masked-AVB_8-7946 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1735-snap_masked-BAQ_7-7673 | NA | NA | NA | NA | Accessory | candidate HGT | Schizosaccharomyces sp. | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1736-snap_masked-APR_4-6467 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1737-snap_masked-AVB_8-7935 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1738-snap_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1739-snap_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1741-snap_masked-CEI_2-9038 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1742-snap_masked-CPA_4-16842 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1743-snap_masked-CPA_4-16842 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1744-snap_masked-CGD_5-5433 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1745-snap_masked-ASC_6-27073 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1746-snap_masked-CDD_2-5914 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1747-snap_masked-BNB_4-11356 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |