Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1715-snap_masked-AFI_5-7003 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1718-snap_masked-BDS_6-12987 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1719-snap_masked-CPR_4-17494 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1720-snap_masked-CPL_4-15232 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1721-snap_masked-BDD_8-15410 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1722-snap_masked-ANM_2-42709 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1723-snap_masked-BDM_5-22999 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1724-snap_masked-BDM_5-22999 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1725-snap_masked-ACI_7-6868 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1726-snap_masked-AVB_8-7945 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1727-snap_masked-CPR_4-17387 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1728-snap_masked-CPG_1-7609 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1729-snap_masked-BBH_6-7041 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1730-snap_masked-BGQ_1-19910 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1731-snap_masked-ADQ_4-7102 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |