Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1700-snap_masked-CGD_5-5439 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1701-snap_masked-BGV_2-15527 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1702-snap_masked-CNT_4-21642 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1703-snap_masked-CDF_1-5358 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1704-snap_masked-CPD_4-13463 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1705-snap_masked-BVC_6-19273 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1706-snap_masked-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1707-snap_masked-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces bailii /parabailii |
| 1708-snap_masked-BAN_7-6753 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1709-snap_masked-YCL-7479 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1710-snap_masked-AHL_3-7774 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1711-snap_masked-AIE_1-4858 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1712-snap_masked-BBM_6-7272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1713-snap_masked-CPQ_4-15165 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1714-snap_masked-ASB_2-40163 | NA | NA | NA | NA | Accessory | candidate HGT | NA | Zygosaccharomyces bailii /parabailii |