Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1684-snap_masked-ASV_1-19156 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1685-snap_masked-BGP_1-17003 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1686-snap_masked-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1687-snap_masked-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1688-snap_masked-CDL_3-6416 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1689-snap_masked-AVB_8-7958 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1690-snap_masked-AVB_8-7958 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1691-snap_masked-ALI_5-15258 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1693-snap_masked-BAM_7-7087 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1694-snap_masked-AHF_3-9612 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1695-snap_masked-YAN-14482 | NA | NA | NA | NA | Accessory | Unknown | S. mikatae | NA |
| 1696-snap_masked-BIF_1-6636 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1697-snap_masked-BAI_7-6394 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1698-snap_masked-BRK_4-4809 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1699-snap_masked-ARH_5-11102 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |