Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 158-augustus_masked-2154-BRV_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 159-augustus_masked-2209-ABD_5 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 160-augustus_masked-223-BFM_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 161-augustus_masked-2311-AKE_3 | NA | NA | NA | NA | Accessory | candidate HGT | Hanseniaspora/Kluvyeromyces/Wickemhamomyces | NA |
| 162-augustus_masked-2356-ARB_2 | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 163-augustus_masked-2357-ARB_2 | NA | NA | NA | NA | Accessory | HGT | Meyerozyma sp. | NA |
| 164-augustus_masked-2357-ARB_2 | NA | NA | NA | NA | Accessory | HGT | Debaryomyces sp. | Zygosaccharomyces rouxii CBS732 chr B |
| 165-augustus_masked-2358-ARB_2 | NA | NA | NA | NA | Accessory | HGT | NA | Vanderwaltozyma polyspora |
| 166-augustus_masked-2358-ARB_2 | NA | NA | NA | NA | Accessory | HGT | Lodderomyces/Candida | Tetrapisispora phaffi CBS 4417 chr 13 |
| 167-augustus_masked-237-BFM_3 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 168-augustus_masked-2370-ARB_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 169-augustus_masked-2392-BTV_5 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 170-augustus_masked-2392-BTV_5 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 171-augustus_masked-244-BFM_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 172-augustus_masked-253-BFM_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |