Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1669-snap_masked-BEE_6-12017 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1670-snap_masked-BEE_6-12017 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1671-snap_masked-CQG_6-13109 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1672-snap_masked-YCZ-6600 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1673-snap_masked-AQA_4-7086 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1674-snap_masked-BHR_4-9388 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1675-snap_masked-AQD_4-6814 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1676-snap_masked-AIE_1-5054 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1677-snap_masked-AFA_4-7928 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1678-snap_masked-CPR_4-17651 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1679-snap_masked-CPI_4-15424 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1680-snap_masked-APS_4-8484 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1681-snap_masked-APS_4-8484 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1682-snap_masked-CLG_4-26387 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1683-snap_masked-CPL_4-15430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |