Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1653-snap_masked-AHG_3-5017 | NA | NA | NA | NA | Accessory | HGT | NA | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1654-snap_masked-AHG_3-5017 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1655-snap_masked-BBM_6-7233 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1656-snap_masked-BGR_1-19009 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1657-snap_masked-AMC_5-5099 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1658-snap_masked-CNP_1-20000 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1659-snap_masked-BDQ_6-13887 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1660-snap_masked-BCB_3-14860 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1661-snap_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 1662-snap_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 1663-snap_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1664-snap_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1666-snap_masked-AFB_4-8178 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1667-snap_masked-BMV_2-11488 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1668-snap_masked-AEL_3-25454 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |