Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1638-snap_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1639-snap_masked-CLG_4-26269 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1640-snap_masked-ARP_2-8812 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1641-snap_masked-YBR-7258 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1642-snap_masked-BCD_8-12448 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1643-snap_masked-BAN_7-6824 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1644-snap_masked-BQN_4-5641 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1645-snap_masked-CPK_4-16853 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1646-snap_masked-AIE_1-5046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1647-snap_masked-BAG_6-6343 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1648-snap_masked-CGE_5-5812 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1649-snap_masked-AKB_2-9725 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1650-snap_masked-ACQ_8-5049 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1651-snap_masked-AHG_3-5017 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces sp. | NA |
| 1652-snap_masked-AHG_3-5017 | NA | NA | NA | NA | Accessory | Unknown | NA | Zygosaccharomyces parabailii chrs 1 and 2 |