Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1623-snap_masked-AMM_4-6587 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1624-snap_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1625-snap_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1626-snap_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1627-snap_masked-AQD_4-6879 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1628-snap_masked-CQS_4-6404 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1629-snap_masked-CQS_4-6404 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1630-snap_masked-BBM_6-7046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1631-snap_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1632-snap_masked-AID_2-6456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1633-snap_masked-AID_2-6456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1634-snap_masked-AID_2-6456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1635-snap_masked-CPL_4-15567 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1636-snap_masked-AID_2-6449 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1637-snap_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |