Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1608-snap_masked-AIE_1-5035 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1609-snap_masked-CPG_1-7486 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1610-snap_masked-CKF_3-7120 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1611-snap_masked-CCQ_1-5470 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1612-snap_masked-CCQ_1-5470 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1613-snap_masked-CPA_4-16966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1614-snap_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1615-snap_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1616-snap_masked-YCC-11519 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1617-snap_masked-AVB_8-7764 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1618-snap_masked-ABD_5-6706 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1619-snap_masked-ABD_5-6706 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1620-snap_masked-ABD_5-6706 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1621-snap_masked-ABL_5-5136 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1622-snap_masked-BHI_4-7563 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |