Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1593-snap_masked-CNH_4-20281 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1594-snap_masked-AMH_5-6573 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1595-snap_masked-CEI_2-8878 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1596-snap_masked-CPM_4-14907 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1597-snap_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1598-snap_masked-AVB_8-8024 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1599-snap_masked-BBM_6-7242 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1600-snap_masked-CPR_4-17880 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1601-snap_masked-ATV_5-44131 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1602-snap_masked-CCH_4-6793 | NA | NA | NA | NA | Accessory | candidate HGT | Torulaspora sp. | Torulaspora delbrueckii CBS 1146 chr 5 |
| 1603-snap_masked-CCH_4-6793 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1604-snap_masked-BAH_6-7523 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1605-snap_masked-CPL_4-15597 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1606-snap_masked-BBM_6-7244 | YSC0002 | KHR1 | KHR | Killer toxin; encoded on the left arm of chromosome IX in some strains, including YJM789 | Accessory | Ancestral | NA | NA |
| 1607-snap_masked-AMH_5-6336 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |